Re: [ccp4bb] Question about losing reflections when refining in PHENIX

2019-10-28 Thread Boaz Shaanan
Hi, following Jonathan's reply, unless you specify "no anomalous" in the input file, Phenix will refine by default against the anomalous data in your input mtz, even if the signal is weak. You should also check how you define the type of mtz columns to be used in the refinement. There are sever

Re: [ccp4bb] Question about losing reflections when refining in PHENIX

2019-10-28 Thread Jonathan Cooper
Hello, it looks as though the No observations that phenix is reporting is exactly twice the number of unique reflections. Perhaps phenix is reporting the merging statistics for the Friedel pairs (i.e. F(+) and F(-)) within your merged dataset. Hence the stats look much better than those for the

[ccp4bb] Question about losing reflections when refining in PHENIX

2019-10-28 Thread Nemanja Vuksanovic
Dear All, I need a bit of help with an issue I am encountering with one of my datasets when using phenix.refine. After processing data with Mosflm I get the following parameters: Overall InnerShell OuterShell Low resolution limit 65.69 65.69 2.55 High resolutio