Dear Jon,
yes indeed, as it was figured out with Eugene, it is my case. The
problem was PDB ID in the header, which was putted there by
refmac5. Removing or changing to PDB ID 1XXX solves the problem.
Thank you both for help.
Best regards
Jan
Dne 12. 1. 2015 v 17:28 Jon Agirre napsal(a
While most (all?) CCP4 programs use the MMDB library for reading
PDB files, handling of incorrect PDBs is not consistent.
Default settings in MMDB (and in clipper) are strict, but most of the
programs use a combination of options that make it more liberal (SetFlag()).
Marcin
On Mon, Jan 12, 2015
Hi Jan,
Privateer relies on Clipper-minimol, which in turn uses MMDB. According to
MMDB's error code description list (
https://www.ebi.ac.uk/pdbe/docs/cldoc/object/cl_obj_irets.html) :
Error_WrongEntryID 3 A PDB or mmCIF record that ought to display
this entry's ID, shows an ID contradic
Dear all,
I am experiencing some troubles with running Privateer. It seems to fail
to read a PDB file. The Error message:
Reading xxx.pdb... MMDBfile: read_file error: xxx.pdb :3
terminate called after throwing an instance of 'clipper::Message_fatal'
Aborted
Any ideas?
Best regards,
Jan
