Re: [ccp4bb] Primer design

2017-07-24 Thread Tom Peat
From: CCP4 bulletin board on behalf of Keller, Jacob Sent: Tuesday, July 25, 2017 1:43 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Primer design >No need of the whole exome. Sequencing The second PCR product will do the job >I guess. Second PCR (from the cDNA pool

Re: [ccp4bb] Primer design

2017-07-24 Thread Keller, Jacob
y 24, 2017 7:43 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Primer design Dear Syed, The process is very trivial to clone your gene of interest. Assuming your gene is transcribed as mono-cistronic mRNA, take the oligodT primer as reverse primer. First isolate the total RNA from the ti

Re: [ccp4bb] Primer design

2017-07-24 Thread Debasish Kumar Ghosh
ent: Monday, July 24, 2017 7:43 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Primer design Dear Syed, The process is very trivial to clone your gene of interest. Assuming your gene is transcribed as mono-cistronic mRNA, take the oligodT primer as reverse primer. First isolate the total RN

Re: [ccp4bb] Primer design

2017-07-24 Thread Keller, Jacob
Or sequence the whole exome for what, $500-1000? JPK -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Debasish Kumar Ghosh Sent: Monday, July 24, 2017 7:43 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Primer design Dear Syed, The

Re: [ccp4bb] Primer design

2017-07-24 Thread Debasish Kumar Ghosh
/computational_functional_genomics.html - Original Message - From: "syed ibrahim" <048c02cac012-dmarc-requ...@jiscmail.ac.uk> To: CCP4BB@JISCMAIL.AC.UK Sent: Monday, July 24, 2017 4:56:00 PM Subject: [ccp4bb] Primer design Hello All I am interested in cloning a gene from a plant

Re: [ccp4bb] Primer design

2017-07-24 Thread Artem Evdokimov
Have to do primer walking in a cdna library first. Artem On Jul 24, 2017 7:26 AM, "syed ibrahim" < 048c02cac012-dmarc-requ...@jiscmail.ac.uk> wrote: Hello All I am interested in cloning a gene from a plant. I searched the database only partial sequence is available, ie: for 160 residues onl

[ccp4bb] Primer design

2017-07-24 Thread syed ibrahim
Hello All I am interested in cloning a gene from a plant. I searched the database only partial sequence is available, ie: for 160 residues only. The full length of the protein is around 570 residues. I designed forward primer and I have no clue to design reverse primer. Any help Thank you Sy