Dear Mohamed,
There is a software called CAVER to calculate tunnels in the protein for a
given pdb file. ( http://caver.cz/)
It has also a PyMol plugin which you can find from its web site.
Burak
Sent from my iPhone
On 20 Jan 2017, at 18:45, Mohamed Noor
mailto:mohamed.n...@staffmail.ul.ie>>
Dear all
I think this was discussed before on this board but I can't find the relevant
thread(s), so apologies.
I have a crystal structure on an enzyme with the NAD+ cofactor bound but no
substrate, despite trying both co-crystallization and soaking methods and
collecting datasets from 20-30 c
