Try changing the transparency setting to Multi-Layer -- this will prevent the
2nd overlapping surface from appearing "solid" (assuming I understand you
correctly)
In the PyMOL menu bar, go to: Setting > Surface > Multi-Layer
Hope that helps!
Kip
On Oct 2, 2012, at 11:09 AM, Christopher Bro
On 10/03/2012 12:09 AM, Christopher Browning wrote:
Dear All,
I was wondering if anybody knows how one can have two transparent
surfaces overlapping but then being able to see how the 2 intersect
using PYMOL. At the moment, if I have two transparent surfaces
overlapping I don't see how they over
I am assuming you are after something like a "difference" map of the two
surfaces.
http://www.pymolwiki.org/index.php/Map_set
Map_set command can average, copy, difference, maximum, minimum, sum and unique
Hope this is what you are after.
Dan
Dear All,
I was wondering if anybody knows how one can have two transparent
surfaces overlapping but then being able to see how the 2 intersect
using PYMOL. At the moment, if I have two transparent surfaces
overlapping I don't see how they overlap internally, only externally. I
can see how they ov
