Re: [ccp4bb] Offtopic: FAD enzymatic assay

2008-12-05 Thread michael nelson
You might be right. I can not rule out the possibility. By the way, is the PMS/DCPIP system fairly stable in the aerobic condition? Mike --- On Thu, 12/4/08, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote: From: [EMAIL PROTECTED] <[EMAIL PROTECTED]> Subject: Re: [ccp4bb] Offtopic: F

Re: [ccp4bb] Offtopic: FAD enzymatic assay

2008-12-04 Thread michael nelson
Dear all, I may sound stupid enough. I tried the PMS-DCPIP assay system as suggested, and I choose to observe the absorption at 600nM. However, when I initialize the reaction, I actually see the Abs slowly but steadily increasing rather than decreasing. How the FAD interact with the enzyme is

Re: [ccp4bb] Offtopic: FAD enzymatic assay: a little bit more about my enzyme

2008-12-02 Thread Edward A. Berry
Does the FAD actually dissociate on each turnover, or does it remain bound and transfer electrons to an acceptor? Succinate dehydrogenase is an example of the latter, and it can be readily assayed using a mediater phenazine methosulfate to accept the electrons and transfer them to a redox dye dich

Re: [ccp4bb] Offtopic: FAD enzymatic assay: a little bit more about my enzyme

2008-12-02 Thread Guenter Fritz
Hi Michael, Fraser et al writes that in case of Synechococcus phytoene desaturase 'NAD+ and NADP+ were observed to be involved, whilst FAD was an ineffective electron acceptor ' Biochem J. 1993 May 1;291 ( Pt 3):687-92 HTH Guenter PS The enzyme itself has no flavin bound? michael nelson wro

Re: [ccp4bb] Offtopic: FAD enzymatic assay: a little bit more about my enzyme

2008-12-02 Thread conancao
-0800From: [EMAIL PROTECTED]: [ccp4bb] Offtopic: FAD enzymatic assay: a little bit more about my enzymeTo: CCP4BB@JISCMAIL.AC.UK Dear all,Thank you for all your kind replies.Here is a little bit more about the enzyme and how I carry out the assay at the first place.My enzyme is a lipid desaturase

[ccp4bb] Offtopic: FAD enzymatic assay: a little bit more about my enzyme

2008-12-02 Thread michael nelson
Dear all, Thank you for all your kind replies. Here is a little bit more about the enzyme and how I carry out the assay at the first place. My enzyme is a lipid desaturase, originally from plant but overexpressed in bacteria. FAD serves as a co-factor for this enzyme, in which FAD is reduced t

Re: [ccp4bb] Offtopic: FAD enzymatic assay

2008-12-01 Thread conancao
Mike: The trick may be doing the assay under anaerobic condition, especially if the FAD cofactor is sensitive to oxygen. You need an anaerobic train and tanometers for the experiment. Good refs: Hille, R. Biochemistry 1991 Sep 3;30(35):8522-9. Electron transfer within xanth

[ccp4bb] Offtopic: FAD enzymatic assay

2008-12-01 Thread michael nelson
was working to set up an FAD enzymatic assay. I wished to be able to use 450nM to continuously monitor the progress of the reaction. The substrate I used is the natural substrate of the enzyme and the protein is recombinant protein and I assume it's active since I do see changes in TLC plate. B