ards,
Eric
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From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Tim Gruene
Sent: Tuesday, May 15, 2012 2:20 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Off topic about program for multiple protein
sequence alignment
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From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Tim Gruene
Sent: 15 May 2012 08:20
To: ccp4bb
Subject: Re: [ccp4bb] Off topic about program for multiple protein
sequence alignment
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Dear Donghui,
even withi
; From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
> Tim Gruene
> Sent: 15 May 2012 08:20
> To: ccp4bb
> Subject: Re: [ccp4bb] Off topic about program for multiple protein
> sequence alignment
>
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Dear Donghui,
even within one program (clustalw) you would get different results by
picking different weighting schemes (clustalx: Aligment->Alignment
Parameter -> Multiple Alignment Parameter: BLOSUM, PAM, Gonnet...).
As with any software I would as
Dear all,
I want to know your suggestions about current protein sequence alignment
programs. It seems that different programs give different alignment results
such as from analysis of Clustal W and MULTALIN. Thanks for any input or
comments.
Best regards,
Donghui
