Re: [ccp4bb] Off topic: How to identify a unknown ligand

2011-03-16 Thread Savvas Savvides
Hi Xiaopeng To add to Artem's comments: Does the presumed gsh make a mixed disulfide in the active site?i.e. is it covalently bonded to the active site via a s-s bond? If yes then MS on your purified sample should easily give you the answer. If a mixed s-s is indeed the scenario then purifying the

Re: [ccp4bb] Off topic: How to identify a unknown ligand

2011-03-15 Thread Artem Evdokimov
Tightly bound ligands commonly survive purification :) Several unexpected discoveries have been made this way! If you think your stuff is GSH, soak some 'real' GSH or co-crystallize with it, and see if density shape changes from what you had before. This is not guaranteed to work because sometimes

[ccp4bb] Off topic: How to identify a unknown ligand

2011-03-14 Thread Xiaopeng Hu
Dear all, Sorry for this off topic question. We are working on protein/inhibitor complex structure although we can not get our inhibitors in. However, we did find a strange density at the active site, it looks really like GSH, the natural co-enzyme of thiis protein.We tried to use very simple