Re: [ccp4bb] OT: mapping PDB to mmCIF data quantities

2015-07-08 Thread Phil Jeffrey
Thanks Jose - I missed that one. REMARK 2 is somewhat ambiguous with: _refine.ls_d_res_high and _reflns.d_resolution_high although the former makes more sense and seems to be what corresponds to REMARK 2. Haven't yet seen an entry with only _reflns.d_resolution_high and not _refine.ls_d_res_h

Re: [ccp4bb] OT: mapping PDB to mmCIF data quantities

2015-07-08 Thread John Berrisford
REMARK 2 is generated from _refine.ls_d_res_high http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v40.dic/Items/_refine.ls_d_res_high.html Regards John On Wednesday 08 July 2015 15:04:45 Jose Manuel Duarte wrote: > This looks like the mapping you are after: > > http://mmcif.wwpdb.org/docs/pdb_to

Re: [ccp4bb] OT: mapping PDB to mmCIF data quantities

2015-07-08 Thread Jose Manuel Duarte
This looks like the mapping you are after: http://mmcif.wwpdb.org/docs/pdb_to_pdbx_correspondences.html It maps only the structured PDB data items to their equivalent mmCIF items. For instance REMARK 2 is not there, but REMARK 200 is. The resolution value should then be in "REMARK 200 RESOLUTI

Re: [ccp4bb] OT: mapping PDB to mmCIF data quantities

2015-07-07 Thread Ethan A Merritt
On Tuesday, 07 July, 2015 13:05:55 Phil Jeffrey wrote: > I'm updating some code to have limited mmCIF/PDB format interoperability > and have hit a snag. While I can infer the connection between some data > items in the PDB header REMARK and the items in mmCIF I can't > definitively deduce some

[ccp4bb] OT: mapping PDB to mmCIF data quantities

2015-07-07 Thread Phil Jeffrey
I'm updating some code to have limited mmCIF/PDB format interoperability and have hit a snag. While I can infer the connection between some data items in the PDB header REMARK and the items in mmCIF I can't definitively deduce some others. In particular the mapping of REMARK 2 RESOLUTION se