AC.UK"
Subject: [ccp4bb] Modelling protein/protein interfaces
Hello
If you are dealing with oligomers conserved in evolution, InterEvDock can be a
good choice since it implements a coevolution-based score
(http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::InterEvDock2).
Hello
If you are dealing with oligomers conserved in evolution, InterEvDock can be a
good choice since it implements a coevolution-based score
(http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::InterEvDock2).
Their new version handle oligomers with sequence alignments automaticall
I have also heard about Frodock. The primary reference:
J. I. Garzon, J. R. Lopéz-Blanco, C. Pons, J. Kovacs, R. Abagyan, J.
Fernandez-Recio, P. Chacón (2009) FRODOCK: a new approach for fast rotational
protein-protein docking Bioinformatics, 25, 2544-2551
If you go to the webpage (http://chac
I've been quite impressed by ClusPro (https://cluspro.bu.edu) in the
past. Rather than pure rigid-body docking it makes some (pretty good)
effort to adjust interacting sidechains into reasonable arrangements.
The advanced options also allow you to specify attractions and
repulsions between spec
haddock may be an appropriate tool
https://haddock.science.uu.nl/
On 26/1/2018 8:34 PM, Thomas Krey wrote:
Dear colleagues,
Is there any appropriate tool for docking an interacting protein to a
relatively large protein-protein interface (>2500 A2). We are facing a
hetero-oligomer for whic
Dear colleagues,
Is there any appropriate tool for docking an interacting protein to a
relatively large protein-protein interface (>2500 A2). We are facing a
hetero-oligomer for which we approximately know the interfaces as well as the
structures of the individual protomers and would like to mo
