Re: [ccp4bb] Mean B factors and number of atoms (Refmac/baverage)

2020-11-26 Thread Jon Cooper
Hello, yes, I tangled with this about a year ago so my memory is a bit vague. I think you can get the mean protein B-factor from the refmac log file, but for ligands, etc, I had to write a script. I can dig it out this evening if that's any use. Best wishes, Jon Cooper Sent from ProtonMail mob

Re: [ccp4bb] Mean B factors and number of atoms (Refmac/baverage)

2020-11-26 Thread Julia Griese
bb] Mean B factors and number of atoms (Refmac/baverage) Hi all, I’m writing a Table 1 and getting a bit confused when it comes to number of atoms and average B factors. Refmac has these in the table in the GUI, but the atom numbers in that table seem to include H, and I’m only interested in non-H at

Re: [ccp4bb] Mean B factors and number of atoms (Refmac/baverage)

2020-11-26 Thread Robbie Joosten
bject: [ccp4bb] Mean B factors and number of atoms (Refmac/baverage) Hi all, I’m writing a Table 1 and getting a bit confused when it comes to number of atoms and average B factors. Refmac has these in the table in the GUI, but the atom numbers in that table seem to include H, and I’m only intere

[ccp4bb] Mean B factors and number of atoms (Refmac/baverage)

2020-11-26 Thread Julia Griese
Hi all, I’m writing a Table 1 and getting a bit confused when it comes to number of atoms and average B factors. Refmac has these in the table in the GUI, but the atom numbers in that table seem to include H, and I’m only interested in non-H atoms. As an example, the PDB file says: REMARK 3