Jason Porta 05/09/09 3:19 PM >>>
Hi everybody,
Sorry if this message was already asked (I could not find it in the
archives). I am making a figure of a recently solved protein structure
including the electron density. I would like the electron density to
cover only the protein, and
s will look lovely too if you
just touch them up with with some white-out and a sharpie.
Do the honest thing and show the whole truth, using the
z-clipping to get a comprehensible slab.
Original message
>Date: Sat, 9 May 2009 18:53:35 -0500
>From: Carlos Huerta
>Subject
ames Stroud
>Subject: Re: [ccp4bb] Manipulating electron density
>To: CCP4BB@JISCMAIL.AC.UK
>
>On May 10, 2009, at 12:21 PM, Phoebe Rice wrote:
>> Of COURSE the map will look lovely if you carve it off at 1.5A
>> from your atoms. And your gels will look lovely too if you
&
On May 10, 2009, at 12:21 PM, Phoebe Rice wrote:
Of COURSE the map will look lovely if you carve it off at 1.5A
from your atoms. And your gels will look lovely too if you
just touch them up with with some white-out and a sharpie.
Do the honest thing and show the whole truth, using the
z-clipping
message
>Date: Sat, 9 May 2009 18:53:35 -0500
>From: Carlos Huerta
>Subject: Re: [ccp4bb] Manipulating electron density
>To: CCP4BB@JISCMAIL.AC.UK
>
>Hi Jason,
>
>If you already created a .map from CCP4 and changed the
extension to .ccp4. Then, to create a map in PyMol
Hi Jason,
If you already created a .map from CCP4 and changed the extension to .ccp4.
Then, to create a map in PyMol for your protein only is the following.
create chainA, (chain A & pdb name) #I think you can leave out the pdb
name
isomesh mesh1, your map, 1.0, (chainA), carve=1.5
If th
Hi everybody,
Sorry if this message was already asked (I could not find it in the archives).
I am making a
figure of a recently solved protein structure including the electron density. I
would like the
electron density to cover only the protein, and not the surrounding space where
the
symmet
