ehalf Of *
> L
> *Sent:* Monday, October 14, 2013 4:53 AM
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Subject:* [ccp4bb] Ligand binding protein partner search
>
> ** **
>
> Hi all,
>
> ** **
>
> I'm looking for a way to find/predict protein partner(s) for our ligand
>
will return PDB entries with ligands that
are chemically similar to your ligand.
Peter Rose,
RCSB PDB
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of L
Sent: Monday, October 14, 2013 4:53 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Ligand binding protein partner search
Hi
It's definitely possible to rig, say, autodock to run the same small
molecule over every protein in the PDB. Results, of course, should be
taken with a grain of salt.
On Mon, 2013-10-14 at 20:53 +0900, L wrote:
> Hi all,
>
>
> I'm looking for a way to find/predict protein partner(s) for our
> l
Hi all,
I'm looking for a way to find/predict protein partner(s) for our ligand
(small chemical; MW<500 Da).
There're lots of servers and softwares to find/predict a ligand with known
protein structure, but hardly find a way to discover potential protein
partner(s) with known ligand.
That would
