Mark,
Ligand Explorer displays hydrogen bonds, water-mediated hydrogen
bonds, metal coordination, and hydrophobic contacts. High resolution
images can be exported in several file formats.
Ligand Explorer is available from each PDB entry's Structure Summary
page at the RCSB PDB (www.pdb.or
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] LIGPLOT or similar (quick summary)
Dear All,
people have pointed me to:
LigPlot+ (http://www.ebi.ac.uk/thornton-srv/software/LigPlus/)
MOE from ChemComp (not free)
PDBSUM (http://www.ebi.ac.uk/pdbsum/): prerun LIGPLOT results, only for
released pdb coordinat
Dear All,
people have pointed me to:
LigPlot+ (http://www.ebi.ac.uk/thornton-srv/software/LigPlus/)
MOE from ChemComp (not free)
PDBSUM (http://www.ebi.ac.uk/pdbsum/): prerun LIGPLOT results, only for
released pdb coordinates.
looks like I am stuck to Windows for now - at least it runs.
Mark
Mark, you might want to try PDBsum (http://www.ebi.ac.uk/pdbsum/), it will
generate a LIGPLOT output for a given PDB code entered, which can be
downloaded as high resolution .pdf or .ps
Best,
Javier
On Wed, Aug 25, 2010 at 2:49 PM, Tim Gruene wrote:
> Hello Mark,
>
> if you would describe the er
Hello Mark,
if you would describe the error message you get from the UNIX version of
LIGPLOT, someone on the list might be able to help you while you have to wait
for and apple installer version or the (commercial) alternatives.
Looking at the pictures about ligplot I found on the web and conside
Hi Mark,
MOE from ChempComp does something similar, but I think it is not for free.
Regards
Christian
Am Mittwoch 25 August 2010 19:51:08 schrieben Sie:
> Dear All,
>
> Having just installed LIGPLOT under Windows, I find it rather convoluted to
> run. It has to be run via de command line wi
Dear All,
Having just installed LIGPLOT under Windows, I find it rather convoluted to
run. It has to be run via de command line window, and I try to avoid Windows as
much as I can anyway.
I also tried to install the Unix version on MacOSX, but was not able to get it
running properly, probably a
