is a motivation for combining sticks with spacefill. Can export
higher res png of the graphics too.
all the best
Martyn
From: Wei Shi
To: CCP4BB@JISCMAIL.AC.UK
Sent: Monday, 20 January 2014, 4:40
Subject: [ccp4bb] How to show the ligands (both as s
Hi guys,
Thank you so much for the suggestions!
The suggestion to "make two objects of your ligand, display one as sphere
and the other as stick. Then change the transparency setting for the
spheres" works!! This way, the sphere and the stick can colored
differently. And, I also found that show the
Hi Wei,
I think it's easier to do with a surface representation.
I'd do something like this:
# start script
fetch 3b6a, async=0
as cartoon
extract ligand, c. c and organic
util.chainbow("3b6a")
color green, elem c and ligand
color oxygen, elem o and ligand
show surface, ligand
set surfac
Hi Wei
*Dead easy* in ccp4mg - display your object as ball and stick, clone it, then
display the clone with reduced opacity (or increased transparency).
On 20 Jan 2014, at 04:40, Wei Shi wrote:
> Hi all,
> Please see attached Fig where they show the ligand both as sticks and spheres
> at the
chanan/
From: Wei Shi [mailto:wei.shi...@gmail.com]
Sent: Sunday, January 19, 2014 11:41 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] How to show the ligands (both as sticks and sphere) as shown
here in Pymol
Hi all,
Please see attached Fig where they show the ligand both as sticks and spher
Hi Wei,
make two objects of your ligand, display one as sphere and the other as stick.
Then change the transparency setting for the spheres.
Jürgen
On Jan 19, 2014, at 11:40 PM, Wei Shi
mailto:wei.shi...@gmail.com>> wrote:
Hi all,
Please see attached Fig where they show the ligand both as stick
