CCP4 has a number of such utilities, such as pdbset.
http://www.ccp4.ac.uk/html/pdbset.html
You can find others by looking here:
http://www.ccp4.ac.uk/html/FUNCTION.html
HTH,
William G. Scott
http://scottlab.ucsc.edu/~wgscott
On Oct 7, 2014, at 11:01 AM, Sasha Pausch wrote:
> Thank you
> On Oct 6, 2014, at 12:04 PM, Sasha Pausch wrote:
>
> Hello All,
>
> I would like to know how to change the nomenclature of bases (for example
> from Ad to DA for adenosine triphosphate) in PDB file.
perl -pi -e ‘s|Ad|DA|g’ your.pdb
Hello All,
I would like to know how to change the nomenclature of bases (for example
from Ad to DA for adenosine triphosphate) in PDB file.
