Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-25 Thread Cathy Lawson
Dear Hong, As Eugene mentioned, you should be able to build the full virus assembly using PISA. Another option is to use the multiscale model menu of UCSF Chimera (default setting is "Biological Assembly") to generate the complete virus assembly from PDB BIOMT records. If this is a new struct

Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-25 Thread eugene . krissinel
C.UK<mailto:CCP4BB@JISCMAIL.AC.UK>] On Behalf Of Guan Hong Hsiang Sent: Wednesday, April 24, 2013 11:19 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] How to generate a complete viirus PDB Dear all: I have one subunit PDB of one virus with a NCS reco

Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-25 Thread Bradley Kearney
ology Jack Johnson Laboratory From: sujata halder [mailto:halder.suj...@gmail.com] Sent: Thursday, April 25, 2013 12:32 AM To: Bradley Kearney Cc: CCP4BB@jiscmail.ac.uk Subject: Re: [ccp4bb] How to generate a complete viirus PDB Hi, In continuation to the previous suggestion about usin

Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-25 Thread abhimanyu singh
of Integrative Structural and Computational Biology >> >> Jack Johnson Laboratory**** >> >> ** ** >> >> ** ** >> >> *From:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *On Behalf Of >> *Guan Hong Hsiang >> *Sent:* Wednesday, April 24

Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-25 Thread sujata halder
n board [mailto:CCP4BB@JISCMAIL.AC.UK] *On Behalf Of *Guan > Hong Hsiang > *Sent:* Wednesday, April 24, 2013 11:19 PM > *To:* CCP4BB@JISCMAIL.AC.UK > *Subject:* [ccp4bb] How to generate a complete viirus PDB > > ** ** > > Dear all:*

Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-24 Thread Bradley Kearney
@JISCMAIL.AC.UK] On Behalf Of Guan Hong Hsiang Sent: Wednesday, April 24, 2013 11:19 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] How to generate a complete viirus PDB Dear all: I have one subunit PDB of one virus with a NCS record. Which program should I use to generate a complete virus PDB

Re: [ccp4bb] How to generate a complete viirus PDB

2013-04-24 Thread Matthew Bowler
Hi Hong, you can usually download the 'biological assembly' from the PDBe, be warned that for viruses this is rather large, cheers, Matt. On 25/04/2013 08:19, Guan Hong Hsiang wrote: Dear all: I have one subunit PDB of one virus with a NCS record. Which program should I use to gener

[ccp4bb] How to generate a complete viirus PDB

2013-04-24 Thread Guan Hong Hsiang
Dear all: I have one subunit PDB of one virus with a NCS record. Which program should I use to generate a complete virus PDB using the NCS? Thank you Hong Hsiang