Re: [ccp4bb] How to define NCS in REFMAC

2010-09-09 Thread Hailiang Zhang
Dear Jürgen: Exactly! 1SS8, the tls-refined GroEL. I generated a PDB containing the total anistropic B values by TLS, based on which I want to reproduce the R factor by REFMAC as they used. Thanks for your advice, following is my script. Unfortunately, it failed to reproduce the PDB R factor... N

Re: [ccp4bb] How to define NCS in REFMAC

2010-09-09 Thread Jürgen Bosch
Take a look at this part of a script, I added your NCS operators in two options. So you are working on GroEL ? Good luck, Jürgen #!/bin/csh -f set prevVer = 01 set prevRun = 00 set currVer = 02 set currRun = 04nolig set currData = my_latest_structure # set xyzin = omitted_ligands.pdb set xyz

[ccp4bb] How to define NCS in REFMAC

2010-09-09 Thread Hailiang Zhang
Hi there: The REFMAC manual give me a hard time to define the NCS during refinement. Can anybody give a first time user a sample script based on the following PDB header (NCS part only is ok, but please include how todefine tight restrant only for both positional and B ref, for both NCS groups)? T