A standard orientation is anything you want it to be and is usually
defined in the context of orthogonal axes. It is simply a reference
point from which you apply the results of your search. We usually
use one or more of the orthogonal axes as a starting point for easier
visualization.
I am experimenting with GLRF and am having trouble calculating the
locked self rotation function for a protein of known structure. The
protein has a 3 fold NCS axis that is not parallel to a
crystallographic axis. I'm at the step of specifying the local
symmetry elements for the locked sel
