Re: [ccp4bb] Fitting of a trigonal bipyrimidal phosphorus

2012-09-12 Thread Sudipta Bhattacharyya
Dear all, Thanks for your cooperation. Regards, Sudipta. Sudipta Bhattacharyya, Senior Research Fellow, Department of Biotechnology, Indian Institute of Technology Kharagpur, India. > >

Re: [ccp4bb] Fitting of a trigonal bipyrimidal phosphorus

2012-09-11 Thread Avinash Punekar
Dear Sudipta, Use Phenix eLBOW. Give the input SMILES string and get the pdb and cif restraint files as output. Also you can use http://cactus.nci.nih.gov/translate/ to first get the pdb coordinate file from the SMILES string and then run Phenix eLBOW to get the cif restraints. Best regards,

[ccp4bb] Fitting of a trigonal bipyrimidal phosphorus

2012-09-10 Thread Sudipta Bhattacharyya
Dear all, Could anybody please tell me how to get the coordinate file and the cif file for the trigonal bipyramidal (TBP) phosphorus (figure given below for your convenience)? Prodrg server is not helping out in this issue. Thanks in advance. Regards, Sudipta. Sudipta Bhattacharyya Senior Resear