Re: [ccp4bb] Expression of Viral proteins for crystallography

2012-01-25 Thread Phoebe Rice
tributed, no over > representation of any mutation. Isolated wild type > clones generate mutants after transformation. > > Chun > > > > From: CCP4 bulletin board > [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of RubA(c)n > SA!nchez Eugenia > Sent: Wed

Re: [ccp4bb] Expression of Viral proteins for crystallography

2012-01-25 Thread Chun Luo
Sánchez Eugenia Sent: Wednesday, January 25, 2012 8:52 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Expression of Viral proteins for crystallography Dear Gregory and Darren, Thank you for your answers. They have been very useful. 2012/1/24 Gregory Verdon it possible that the protein is

Re: [ccp4bb] Expression of Viral proteins for crystallography

2012-01-25 Thread Rubén Sánchez Eugenia
Dear Gregory and Darren, Thank you for your answers. They have been very useful. 2012/1/24 Gregory Verdon > > it possible that the protein is toxic (even when slightly expressed from > your possibly leaky pET vector), so that e.coli select for mutations that > kill expression of your recombinant

Re: [ccp4bb] Expression of Viral proteins for crystallography

2012-01-24 Thread Stefan Gajewski
Rubén, the previous answer probably addresses your problem accurately. However. If your protein of interest modifies DNA/RNA, it is quite common that your pET constructs will mutate rapidly in E.coli. Lac operons tend to leak quite a bit, which is not enough to detect the protein prior to indu

Re: [ccp4bb] Expression of Viral proteins for crystallography

2012-01-24 Thread Jacob Keller
Inspired by the recent post about "quasispecies:" I have been bothered recently by the following problem: why do species of genetic uniformity exist at all (or do they?)? This first came up when I saw a Nature paper describing live bacteria extracted from a supposedly 250-million-year-old salt cry

Re: [ccp4bb] Expression of Viral proteins for crystallography

2012-01-24 Thread Darren Hart
I think the explanation is this: The source is natural viral RNA which is a mixture of naturally mutated sequences (e.g. flu forms such a quasispecies) See: http://www.virology.ws/2009/05/11/the-quasispecies-concept/ The pooled RNA has an average sequence that you see when you sequence the pooled

[ccp4bb] Expression of Viral proteins for crystallography

2012-01-24 Thread Rubén Sánchez Eugenia
Dear everyone, I am trying to clone a viral protein in the E. Coli BSJ strain and i am having some problems. I start from the viral RNA carrying out a reverse transcription and PCR (RT-PCR) to obtain the protein cDNA. When I sequence this cDNA to check for mutations, there are no mutations. So th