mobile phone…
John
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Zhijie Li
Sent: 10 September 2018 20:42
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] AW: [EXTERNAL] Re: [ccp4bb] Electron density maps for
Cryo-EM structures.
Hi Kevin,
a)
If your goal is merely to
o:CCP4BB@JISCMAIL.AC.UK>
*Betreff:* [EXTERNAL] Re: [ccp4bb] Electron density maps for
Cryo-EM structures.
Hi Marin
I was about to comment on that too but then I realised that Pavel
is referring to the map _contours_ (which is what most people
using a map visualisation
ontour level as you like.
>>
>>
>>
>> Of course, if the authors did not deposit their EM-map, you cannot
>> download it, but the same is true for X-ray structure factors.
>>
>>
>>
>> Happy viewing!
>>
>>
>>
>> Herman
&g
the authors did not deposit their EM-map, you cannot download
> it, but the same is true for X-ray structure factors.
>
>
>
> Happy viewing!
>
>
>
> Herman
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> Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK
> <mailto:
structure factors.
>
>
>
> Happy viewing!
>
>
>
> Herman
>
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> *Von:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *Im Auftrag von
> *Ian Tickle
> *Gesendet:* Montag, 10. September 2018 12:58
> *An:* CCP4BB@JISCMAIL.AC.UK
> *Betreff:* [
Dear Kevin,
Are you referring to "generating a map" from the model (PDB
coordinates) generated from tracing the chain in the ab-initio EM map?
Best wishes,
Natesh
On Mon, 10 Sep 2018 at 09:58, Kevin Jin wrote:
> Dear All,
>
> Is there any sever available to create electron density
download it,
but the same is true for X-ray structure factors.
Happy viewing!
Herman
Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Ian
Tickle
Gesendet: Montag, 10. September 2018 12:58
An: CCP4BB@JISCMAIL.AC.UK
Betreff: [EXTERNAL] Re: [ccp4bb] Electron density maps for
] Electron density maps for Cryo-EM structures.
Hi Marin
I was about to comment on that too but then I realised that Pavel is referring
to the map _contours_ (which is what most people using a map visualisation
program like Coot actually see). So the contoured map does represent an
iso
Great, thanks!
On Sun, Sep 9, 2018 at 9:49 PM Pavel Afonine wrote:
> P.S.: all questions are welcome of course, no labeling. It's just some of
> them are so orthogonal to common sense that answers my be such as well.
> Best,
> Pavel
>
> On Sun, Sep 9, 2018 at 9:38 PM Pavel Afonine wrote:
>
>>
P.S.: all questions are welcome of course, no labeling. It's just some of
them are so orthogonal to common sense that answers my be such as well.
Best,
Pavel
On Sun, Sep 9, 2018 at 9:38 PM Pavel Afonine wrote:
> Hi,
>
> Is there any sever available to create electron density maps for cryo-em
>>
Hi,
Is there any sever available to create electron density maps for cryo-em
> structures?
>
The questions are nonsensical. Here is why:
1) In cryo-EM maps are not electron density maps but surfaces representing
electric potential.
2) Creating such a map is essentially carrying on from cryo-EM
Dear All,
Is there any sever available to create electron density maps for cryo-em
structures? Or, we should create the maps from mmCIF. I am particularly
interested in those cryo-em structures with high resolution, like 2.6~2.8A.
Please give me an education.
Thanks,
Kevin
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