Re: [ccp4bb] Displaying repeats in a amino acid sequence

2010-06-05 Thread Peter Artymiuk
_ > From: CCP4 bulletin board [ccp...@jiscmail.ac.uk] On Behalf Of Tim Gruene > [...@shelx.uni-ac.gwdg.de] > Sent: Friday, June 04, 2010 11:09 PM > To: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] Displaying repeats in a amino acid sequence > > Dear Klaus, > &g

Re: [ccp4bb] Displaying repeats in a amino acid sequence

2010-06-04 Thread Murray, James W
] Displaying repeats in a amino acid sequence Dear Klaus, would the SMART-Server (http://smart.embl-heidelberg.de/) be something you are looking for? If your repeats are long enough to make up domains it might. Tim On Fri, Jun 04, 2010 at 08:15:03PM +, Klaus Sengstack wrote: > Dear

Re: [ccp4bb] Displaying repeats in a amino acid sequence

2010-06-04 Thread Tim Gruene
Dear Klaus, would the SMART-Server (http://smart.embl-heidelberg.de/) be something you are looking for? If your repeats are long enough to make up domains it might. Tim On Fri, Jun 04, 2010 at 08:15:03PM +, Klaus Sengstack wrote: > Dear all, > > I am looking for an alignment program that i

[ccp4bb] Displaying repeats in a amino acid sequence

2010-06-04 Thread Klaus Sengstack
Dear all, I am looking for an alignment program that is able to display repeating units in the sequence. In the C-terminus of my protein I found some specific repeats which I want to visualize.  Does anybody know such program? Thanks a lot. Best regards, K.Sengstack