Re: [ccp4bb] DNA in coot

2012-02-16 Thread Miguel Ortiz Lombardía
Le 15/02/12 11:36, Tim Gruene a écrit : > Hello Lisa, > > which version of coot do you use? Maybe it is outdated and that function > not yet properly implemented. I can confirm Bill's comment, and we work > with coot 0.6.2. > > Cheers, > Tim > > On 02/15/2012 09:01 AM, LISA wrote: >> Hi all, >

Re: [ccp4bb] DNA in coot

2012-02-15 Thread Miguel Ortiz Lombardia
El 16/02/12 05:06, Xun Lu escribió: > Hi Lisa, > > Please go check your PDB file. Are those bases written out like "DT" or > "THY" or "Td". Coot recognizes certain format for DNA bases but I forgot > which one coot likes. I don't have my laptop with me right now. My > guess would be "Td". :) >

Re: [ccp4bb] DNA in coot

2012-02-15 Thread Xun Lu
Hi Lisa, Please go check your PDB file. Are those bases written out like "DT" or "THY" or "Td". Coot recognizes certain format for DNA bases but I forgot which one coot likes. I don't have my laptop with me right now. My guess would be "Td". :) Best, Xun On Wednesday, February 15, 2012, LIS

Re: [ccp4bb] DNA in coot

2012-02-15 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hello Lisa, which version of coot do you use? Maybe it is outdated and that function not yet properly implemented. I can confirm Bill's comment, and we work with coot 0.6.2. Cheers, Tim On 02/15/2012 09:01 AM, LISA wrote: > Hi all, > > I am refinin

[ccp4bb] DNA in coot

2012-02-15 Thread LISA
Hi all, I am refining a structue of protein-DNA complex with coot. I add DNA by "adding ideal DNA/RNA" in the other model. But I cannot edit chi angle of these nucletide, neither the mutate. When I press the mutate and my DNA, coot give amino acid not nucletide. Why? Thanks Lisa