Re: [ccp4bb] Coot question

2013-03-22 Thread Bernhard C. Lohkamp
Hi Nicolas, several possibilities are available for you: - use rigid_bod_refine_zone (http://www.biop.ox.ac.uk/coot/doc/coot/rigid_002dbody_002drefine_002dzone.html#rigid_002dbody_002drefine_002dzone) - use rigid_body_refine_by_atom_selection (see e.g. https://www.jiscmail.ac.uk/cgi-bin/webadmi

[ccp4bb] Coot question

2013-03-21 Thread Nicolas Soler
Dear all, My question concerns the Extension-> modelling-> Rigid body fit residue ranges function in Coot. Although it works well through the interface, I cannot have it to work in a python script, does somebody know the correct syntax? Thanks in advance, Nicolas

Re: [ccp4bb] Coot question

2009-07-14 Thread Jim Fairman
You can change the color of any map or molecule to any color you wish by using the Map Colour and Bond Colour menus. After you have opened a map or molecular model simply go to the Edit menu at the top of the window; Map Colour will be the top option and Bond Colour will be the third from the top

[ccp4bb] Coot question

2009-07-14 Thread James Tucker Swindell II
Greetings all I am trying to change the color scheme Coot uses when opening PDB files. When I open two seperate PDB files in the same session I would like to change the colors such that there is a clear and distinct difference between the two chains (coot does not always do this), ie red and gr

Re: [ccp4bb] coot question for any/all?

2008-03-05 Thread Schubert, Carsten [PRDUS]
; From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] Behalf Of > David Roberts > Sent: Wednesday, March 05, 2008 2:39 PM > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] coot question for any/all? > > > Hello, > > So sorry to post this here but I'm at wits end and a

[ccp4bb] coot question for any/all?

2008-03-05 Thread David Roberts
Hello, So sorry to post this here but I'm at wits end and am just hoping that somebody here has had a similar problem (and subsequent fix). Here goes. I have 7 systems, close to identical, all running FC7. For all, I used the autobuild script on the ccp4 website to generate the entire ccp4

[ccp4bb] COOT question

2007-03-07 Thread Meier Chris (SLH)
Dear all, I have a quick question about COOT: Can the program write out maps (e.g. those generated by the 'NCS maps' averaging function) ? Thanks and best wishes, Chris Christoph Meier UCB-Celltech 216 Bath Road Slough SL1 4EN United Kingdom Tel: +4