Re: [ccp4bb] Coot Problem! adding r-nucleotide in DNA

2009-02-26 Thread Yusuf Akhter
Thanks to Paul and Christian..for responding very quickly to my query. I tried all versions of coot and it worked in only ver 0.4. Now everything is fine. Cheers! Yusuf On Thu, Feb 26, 2009 at 7:04 PM, Yusuf Akhter wrote: > Hi everybody! > I am using coot version 0.5. > I am trying to build a

Re: [ccp4bb] Coot Problem! adding r-nucleotide in DNA

2009-02-26 Thread Christian Biertuempfel
Hi Yusuf, I had a similar problem once when my pdb file did not have the right format. Check your input coordinate file if your DNA nomenclature is correct for coot. Maybe, the program does not recognize your molecule as DNA. Good luck, christian Yusuf Akhter wrote: > Hi everybody! > I am using

[ccp4bb] Coot Problem! adding r-nucleotide in DNA

2009-02-26 Thread Yusuf Akhter
Hi everybody! I am using coot version 0.5. I am trying to build a DNA sequence in my model. At certain positions when i add residues and then used "simple mutate" to make it according to real sequence, it always add ribonucleotide (guanine ribonucleotide, Gr) in place of deoxyribonucleotide (guani