Re: [ccp4bb] Coot/Phenix.refine C-terminus issue

2021-02-18 Thread Neno Vuksanovic
Dear All, Thank you so much for the suggestions. There was indeed a TER in my PDB file and removing it solved the problem. I was using Coot 0.8.9.2. Best Regards, Nen On Thu, Feb 18, 2021 at 11:07 AM Paul Emsley wrote: > On 18/02/2021 15:21, Neno Vuksanovic wrote: > > > > I've been having an

Re: [ccp4bb] Coot/Phenix.refine C-terminus issue

2021-02-18 Thread Paul Emsley
On 18/02/2021 15:21, Neno Vuksanovic wrote: I've been having an issue when manually adding C-terminal residue in Coot (I add a terminal residue, then add OXT atom, and perform real space refinement). The residue links the previous one properly and the density matches it well, but after refinin

[ccp4bb] Coot/Phenix.refine C-terminus issue

2021-02-18 Thread Neno Vuksanovic
Dear All, I've been having an issue when manually adding C-terminal residue in Coot (I add a terminal residue, then add OXT atom, and perform real space refinement). The residue links the previous one properly and the density matches it well, but after refining in Phenix.refine, the residue is un