Re: [ccp4bb] COOT problem

Dear Paul, It seems that XQuartz 2.7.7 is working in my macbook and I can run COOT a bit faster. Thank you for the help. -Rajesh On Wed, Feb 28, 2018 at 5:42 AM, Paul Emsley wrote: > On 27/02/2018 21:11, Rajesh Kumar wrote: > >> >> I just had installed new SSD and latest macOS High Sierra 1

Re: [ccp4bb] COOT problem

Dear Paul, Thank you very much. Only COOT is giving problem. Other programs work very well. I will change XQuartz to 2.7.8 and see if COOT works. regards, Rajesh On Wed, Feb 28, 2018 at 5:42 AM, Paul Emsley wrote: > On 27/02/2018 21:11, Rajesh Kumar wrote: > >> >> I just had installed new S

Re: [ccp4bb] COOT problem

On 27/02/2018 21:11, Rajesh Kumar wrote: I just had installed new SSD and latest macOS High Sierra 10.13.3 into my macbook pro. It seems my macbook is much faster but running COOT is a bit problem. When I open COOT, screen becomes gray for a second and then it opens. When I try to move from o

[ccp4bb] COOT problem

Dear All, I just had installed new SSD and latest macOS High Sierra 10.13.3 into my macbook pro. It seems my macbook is much faster but running COOT is a bit problem. When I open COOT, screen becomes gray for a second and then it opens. When I try to move from one residue to next, it does not mo

Re: [ccp4bb] Coot problem

Dear all, I am using coot 0.6.2 on MacBook. It was working nicely when I was using previous version. With this new coot I am problem as I can not do anything except visualisation. If I try to build or refine always show the message "refinement setup failure, Failed to find restraints" or "mis

[ccp4bb] Coot problem

Dear all, I am using coot 0.6.2 on MacBook. It was working nicely when I was using previous version. With this new coot I am problem as I can not do anything except visualisation. If I try to build or refine always show the message "refinement setup failure, Failed to find restraints" or "miss

Re: [ccp4bb] Coot Problem! adding r-nucleotide in DNA

Thanks to Paul and Christian..for responding very quickly to my query. I tried all versions of coot and it worked in only ver 0.4. Now everything is fine. Cheers! Yusuf On Thu, Feb 26, 2009 at 7:04 PM, Yusuf Akhter wrote: > Hi everybody! > I am using coot version 0.5. > I am trying to build a

Re: [ccp4bb] Coot Problem! adding r-nucleotide in DNA

Hi Yusuf, I had a similar problem once when my pdb file did not have the right format. Check your input coordinate file if your DNA nomenclature is correct for coot. Maybe, the program does not recognize your molecule as DNA. Good luck, christian Yusuf Akhter wrote: > Hi everybody! > I am using

[ccp4bb] Coot Problem! adding r-nucleotide in DNA

Hi everybody! I am using coot version 0.5. I am trying to build a DNA sequence in my model. At certain positions when i add residues and then used "simple mutate" to make it according to real sequence, it always add ribonucleotide (guanine ribonucleotide, Gr) in place of deoxyribonucleotide (guani

Re: [ccp4bb] COOT Problem

On Sat, 13 Dec 2008 09:33:11 + Paul Emsley wrote: > Ethan Lai wrote: > > Dear all, > > > > I have recently installed Coot version 0.5 on Fedora 9. However, > > when I tried to open a mtz file, the following error occurs. > > > >>> CCP4 library signal library_file:Bad mode (Error) > >

Re: [ccp4bb] COOT Problem

On Dec 13, 2008, at 7:38 AM, Jayashankar wrote: since we are end users, As am I. we have to depend on big heads like you. Is this an oblique Santa Cruz reference? and i believe that things will be bug free and efficient soon. Some people believe Obama will soon repeal the Patriot Act

Re: [ccp4bb] COOT Problem

Paul and William, since we are end users, we have to depend on big heads like you. and i believe that things will be bug free and efficient soon. If it is a trivial problem, then please do update the FAQs so as to make our ccp4bb not just to bug with these type of questions . should i uninstall

Re: [ccp4bb] COOT Problem

Ethan Lai wrote: Dear all, I have recently installed Coot version 0.5 on Fedora 9. However, when I tried to open a mtz file, the following error occurs. CCP4 library signal library_file:Bad mode (Error) raised in ccp4_file_readchar << Any advices? Thanks! Something of a shot

Re: [ccp4bb] COOT Problem

Yes CCP4I, works better, S.Jayashankar Research Student Institute for Biophysical Chemistry Hannover Medical School Germany. On Sat, Dec 13, 2008 at 6:43 AM, William Scott wrote: > Does ccp4i work? > > > > On Thu, December 11, 2008 8:06 pm, Jayashankar wrote: > > since its a same coot problem,

Re: [ccp4bb] COOT Problem

Does ccp4i work? On Thu, December 11, 2008 8:06 pm, Jayashankar wrote: > since its a same coot problem, > i have one more, > > i am using mac 10.5 leopord osx the thing is, i dont get any pop upped > table even after i do a translate and do a real space refinement . > is it a bug or is it a p

Re: [ccp4bb] COOT Problem

since its a same coot problem, i have one more, i am using mac 10.5 leopord osx the thing is, i dont get any pop upped table even after i do a translate and do a real space refinement . is it a bug or is it a problem in setups of other supportive libraries S.Jayashankar Research Student I

[ccp4bb] COOT Problem

Dear all, I have recently installed Coot version 0.5 on Fedora 9. However, when I tried to open a mtz file, the following error occurs. >> CCP4 library signal library_file:Bad mode (Error) raised in ccp4_file_readchar << Any advices? Thanks!