: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Bond Length Outliers (correction)
Using the Protein Geometry Database (pgd.science.oregonstate.edu) I looked
up all Arg residues in models with resolution of 1.3 A or better and found
5920 examples. The mean value of the O-C-N angle (and I'm ass
m 320
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> *From: *"Bernard D. Santarsiero"
> *To: *"Greg Costakes"
> *Sent: *Thursday, February 16, 2012 11:42:55 AM
> *Sub
-- Original Message -
> From: "Bernard D. Santarsiero"
> To: "Greg Costakes"
> Sent: Thursday, February 16, 2012 11:42:55 AM
> Subject: Re: [ccp4bb] Bond Length Outliers
>
> Greg,
>
> Your RMSD on bond lengths should be around 0.01A (your structu
- Original Message -
From: "Bernard D. Santarsiero"
To: "Greg Costakes"
Sent: Thursday, February 16, 2012 11:42:55 AM
Subject: Re: [ccp4bb] Bond Length Outliers
Greg,
Your RMSD on bond lengths sh
I am currently in the final steps of refining a 1.3A structure and am coming
across a slight problem. According the the pdb file, I have an Rmsd bond length
of 2.55. MolProbity identifies three outliers which correspond to the bond
lengths of:
Asp: C--O , bond length = 1.2A
Arg: C--O , bond le
