Hi Ayan,
Try 3V:
http://3vee.molmovdb.org
It has worked nicely for me. You'll need to delete the substrate/inhibitor
from your coordinate file for one of the runs.
Cheers,
Chris
On Saturday, January 10, 2015, Bio Physics
wrote:
>
> Hello CCP4bb:
>
> Help me to advice any program/server to cal
Hello CCP4bb:
Help me to advice any program/server to calculate active site volume
without substrate/inhibitor and volume of the substrate/inhibitor itself.
Q-site-finder website is not working.
Thank you,
Ayan
On 06/06/2013 08:47 AM, Bosch, Juergen wrote:
Hi Yuri,
http://fpocket.sourceforge.net
http://sts-fw.bioengr.uic.edu/castp/calculation.php
I think GHECOM also compute this.
GHECOM uses morpho maths operators in 3D. Quite beautiful.
http://strcomp.protein.osaka-u.ac.jp/ghecom/
Just to name 2
Hi Yuri,
http://fpocket.sourceforge.net
http://sts-fw.bioengr.uic.edu/castp/calculation.php
Just to name 2
Jürgen
On Jun 5, 2013, at 7:12 PM, Yuri Pompeu wrote:
> Dear BB,
> I am sorry for posting off-topic but it is hard not to ask when you know you
> can get a good answer ;-)
>
> I need to
Dear BB,
I am sorry for posting off-topic but it is hard not to ask when you know you
can get a good answer ;-)
I need to calculate the volume of several active sites. Nothing fancy, just a
number for comparison sake.
I understand there are probably 10 different ways/programs and I would
apprec
