[ccp4bb] Missing DNA density in Protein DNA complex structure

2013-05-04 Thread ASHOK KUMAR Patel
in the complex? Why I am missing 6 or 8 bases in the density? How can we explain the missing DNA in the structure? I will appreciate any kind of explanation and suggestions. Thanks Ashok -- Ashok kumar patel Department of Biophysics Johns Hopkins University Baltimore, MD 21218

[ccp4bb]

2009-10-24 Thread ashok kumar
Dear all i want to know is there any programme to calculate the r.m.s deviation of a some segment while superimposing the whole molecule together. Thanks in advance for any suggestion Ashok

[ccp4bb] calculation of radii

2009-08-10 Thread ashok kumar
Dear all i want to know how can i calculate the alpha helical radii of 3-D structure of a protein. Is there any programme to calculate the radii of alpha helix.