Hello all,
this might not be the appropriate place, but I was wondering if anyone
knows of a database with protein experimental pKa values, with
possibility to search for Cysteines and .pdb structures.
"PINT: Protein-protein Interactions Thermodynamic Database" seems to be down.
The question aro
http://japan.person-finder.appspot.com/?lang=en
The latest numbers I read is that they have 140,000 records, unfortunately
there is no information about TAKENAKA Akio available yet.
Best wishes,
Thomas
On Wed, Mar 16, 2011 at 21:17, Philippe DUMAS
wrote:
> Le 16/03/2011 17:59, REX PALMER a écr
thods published under PMID:
> 20389587.
>
> -James Holton
> MAD Scientist
>
> On 2/9/2011 10:38 AM, Thomas Juettemann wrote:
>>
>> http://www.nanowerk.com/news/newsid=20045.php
>>
>> http://home.slac.stanford.edu/pressreleases/2011/20110202.htm
>>
>>
http://www.nanowerk.com/news/newsid=20045.php
http://home.slac.stanford.edu/pressreleases/2011/20110202.htm
I think it is pretty exciting, although they only take the few
datasets that conform to their
existing model:
"The team combined 10,000 of the three million snapshots they took to
come up
Is this:
http://www.pdb.org/pdb/statistics/holdings.do
what you are looking for?
On Sat, Jan 15, 2011 at 21:28, REX PALMER wrote:
> Does anyone know of a statistical breakdown of successful protein structure
> determinations in terms of the method used?
>
> Rex Palmer
> Birkbeck College
>
It trains you to only use files created by MS Windows and complain if
you get files that use another standard. As usual, follow the money...
On Tue, Dec 14, 2010 at 14:45, Jacob Keller
wrote:
> Why, by the way, is the default text editor in windows, notepad, such
> a lousy text editor? (Sounds li
I certainly did not email it to him!
On Mon, Oct 18, 2010 at 19:05, Bernhard Rupp (Hofkristallrat a.D.)
wrote:
> Dear All,
>
> my J Appl Cryst collection does not extend far enough to unearth
>
> J. Appl. Cryst. (1974). 7, 502-505 [ doi:10.1107/S0021889874010284 ]
> The indexing of single-cry
This book worked great for me:
http://www.amazon.com/Crystallography-Made-Crystal-Clear-Third/dp/0125870736/ref=sr_1_3?ie=UTF8&s=books&qid=1278618216&sr=1-3
Cheers,
Thomas
On Thu, Jul 8, 2010 at 12:35, Peter Hsu wrote:
> Hi all,
>
> I haven't gotten past the phase of growing the crystal, but I'
Does chainsaw not the opposite? Pruning a coordinate file based on
non-conserved residues identified in a MSA?
Yuan has a MSA of known structures and a sequence he wants to add to
it. I am always keen to learn about alignment programs, it would be
great to know how to use chainsaw for this problem.
Dear Yuan,
the MUSCLE program can do that for you. It is capable of doing
profile-profile and profile-sequence alignments.
http://www.drive5.com/muscle/muscle_userguide3.8.html#_Toc260497021
Section 2.10 of the manual should be what you want.
Cheers,
Thomas
On Mon, May 31, 2010 at 01:46, Tim G
Another alignment tool worth to keep an eye on is this one:
http://foldit.wikia.com/wiki/Alignment_Tool
They are still debugging, but the plan is to release a standalone
version after CASP9. Or at least a version that runs in a standalone
FoldIt version.
On Tue, May 25, 2010 at 15:18, Victor A
Many thanks for all answers, it is greatly appreciated.
Best wishes,
Thomas
On Thu, Apr 29, 2010 at 09:50, Ian Tickle wrote:
> On Thu, Apr 29, 2010 at 4:25 PM, Edward A. Berry wrote:
>> Command-line param like XYZIN don't seem to be shell variables,
>> but can be set by variables:
>>
>> bin/nco
Dear all,
I am pretty new to the CCP4 suite. I am trying to automise the
execution and parsing of ncont.
Could someone advise me how (if possible) to pass parameters to the program?
I am trying to do something like
bin/ncont XYZIN 1FNT_BJ.pdb
source /*/B
target /*/J
maxdist 6.0
and have the out
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