[ccp4bb] Research group leader opening at EMBL-EBI

Dear All, At EMBL-EBI, we are recruiting Group Leaders (Faculty members), with a closing date of July 14th and interviews on 02/03 September: https://www.ebi.ac.uk/research/research-group-leaders-at-embl-ebi EMBL-EBI, based near Cambridge, is a European Centre for Computational Biology. Our res

[ccp4bb] Updated AlphaFold structure predictions available for the subset affected by a temporary numerical bug

hanges (detailed in the changelog). Thanks again to our users for continuing to share feedback with us. Please get in touch via alphaf...@deepmind.com <mailto:alphaf...@deepmind.com> if you have any feedback or require support with this change. Best Wishes, Sameer Velankar (EMBL-EBI) a

[ccp4bb] AlphaFold Protein Structure Database - releasing updated structures

...@deepmind.com <mailto:alphaf...@deepmind.com> if you have any feedback or require support with this change. Best Wishes, Sameer Velankar (EMBL-EBI) and Tim Green (DeepMind) To unsubscribe from the CCP4BB list, click the fol

[ccp4bb] AlphaFold Protein Structure Database update - changes to PAE JSON format

af...@deepmind.com> and they may be able to assist. Best Wishes, Sameer Velankar To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This me

Re: [ccp4bb] PDBe deposition issues

and infrastructure. We are working hard with the EBI Systems team to try and resolve the issues and once again offer our apologies for the inconvenience. We will be contacting you off-line to see if we can address the immediate issue. Kind Regards, Sameer Velankar Protein data Bank in Europe

Re: [ccp4bb] ideal ligands

Thank you very much Bernhard for pointing this out. We will investigate what has gone wrong. Thanks Sameer > On 6 Feb 2021, at 14:40, Tristan Croll wrote: > >  > I know 🙂. Just suggesting the most likely cause of the problem. > > -- T > From: Bernhard Rupp > Sent: 06 February 2021 14:38 > T

[ccp4bb] PDBe workshop on programmatic access to macromolecular structure information, 24-25 September 2015

Programmatic Access to Macromolecular Structure Information PDBe Workshop for Programmers, 24-25 September 2015 Deadline for application: Friday 26 June 2015 What? The Protein Data Bank in Europe (PDBe;www.ebi.ac.uk/pdbe/ ) is organising a hands-on, interacti

[ccp4bb] Who is citing me now?

Dear all, Have you ever wondered how many times your structures are mentioned in the literature, even when your paper isn't cited (or when your structure hasn't been published)? You can now find out easily on the redesigned and improved PDBe website. We not only list the papers that have cited

[ccp4bb] PDBe workshop - Making the most of PDB and EMDB data

, Sameer Velankar / When/?August 22nd, 2015 (Saturday), 10:00 AM – 5:00 PM/ Where/? Rovinj, Hotel “Park”, Cissa conference hall / Registration fee/:EUR 20,00 (Registration through the registration system of the ECM29. Number of participants is limited to 40 and they will be accepted on a first

Re: [ccp4bb] Motif searching

Dear Rex, PDBeMotif is an opensource search tool which works with many motifs as 3D structural as sequence, it can search for ligand environment and perform 3D search for similar cliffs in proteins. The tool creates a relational database, it has a data loader and a search interface. The databa