Re: [ccp4bb] Self rotation function calculation

2008-11-25 Thread Karsten Schaefer
Hi Sympath, Did you try to change the default "Search radius"? To my understanding MOLREP estimats the search radius somehow from the volume of the asymmetric unit and not from the expected radius of the monomer (you don't give the program the number of expected molecules). The signal of the SR

Re: [ccp4bb] how to present the surface of a channel

2008-08-28 Thread Karsten Schaefer
Did you try "MOLE" (also available as a PyMOL plugin)? http://mole.chemi.muni.cz/download.php Karsten Jiamu Du wrote: Dear all, I want to prepare a figure to present the surface of a channel inside of a protein as shown in the attached figure. I have used the program PASS and PYMOL (with CAVER)