[ccp4bb] How to calculate energy?

2011-10-14 Thread Huayue Li
tions from idealized geometry. Where can I get these information? Just from the peptide pdb file output by CNS, or using another software? And what is idealized geometry? Thanks! Huayue Li, Ph. D College of Pharmacy Pusan National University Geumjeong-gu, Jangjeon-dong Busan 609-735, Korea Tel

[ccp4bb] How to make a geometric and energetic statistics for 20 NMR structures calculated by CNS program?

2011-10-12 Thread Huayue Li
es by CNS seems not contain these informations. Should I use another software? Thanks. Huayue Li, Ph. D College of Pharmacy Pusan National University Geumjeong-gu, Jangjeon-dong Busan 609-735, Korea Tel: +82-51-510-2185

[ccp4bb] **Possible spam**How to convert CNS PDB format to the most current version of the PDB format?

2011-08-09 Thread Huayue Li
Dear all, How to convert CNS pdb format to the most current version of the PDB format? e.g. "HN" (excluding N-term) in CNS output files should be changed to "H" And I don't know why the CNS put the N-terminal PCA in the ATOM catagory. How to change it as HETATM? Thanks! College of Pharma