Re: [ccp4bb] Classifying Diverse Conformations of Many Structures of a Protein

2015-07-08 Thread Harshavardhan Khare
Hi Jacob, Principal component analysis (pca) might work but it will modify the original dimensions as a linear combination, which might make it difficult to derive physical meaning out of it. May be, you could use decision trees which give results that are easier to interpret. Looking at decision

Re: [ccp4bb] Generate small molecule library

2014-08-12 Thread Harshavardhan Khare
I wrote a simple script following Prof. Jürgen's suggestion. I have attached it to this email. It will only serve the purpose of generating combinations based on specified positions and fragments. regards, harsh On Mon, Aug 11, 2014 at 8:31 PM, Harshavardhan Khare wrote: > H

Re: [ccp4bb] Generate small molecule library

2014-08-11 Thread Harshavardhan Khare
2 > Lab: +1-410-614-4894 > Fax: +1-410-955-2926 > http://lupo.jhsph.edu > > On Aug 11, 2014, at 10:34 AM, Harshavardhan Khare > wrote: > > Dear all, > I have a small organic molecule with three functional groups. I also have > another list of functional gro

[ccp4bb] Generate small molecule library

2014-08-11 Thread Harshavardhan Khare
Dear all, I have a small organic molecule with three functional groups. I also have another list of functional groups. I want to generate all possible combinations of the molecule and any of the three functional groups from the list. Does anybody know a program that performs this task and writes al