Re: [ccp4bb] CCP4BB Digest - 25 May 2011 to 26 May 2011 (#2011-146)

2011-05-26 Thread Geoffrey Feld
Two topics today... 1) Problem with LIBCHECK. Thanks to all who replied to my issue. I was able to resolve the issue before the flurry of responses came in. Basically, I took my CSA modified amino acid, aligned it as best I could to the CYS (especially at the CA), and then manually edited the PDB

[ccp4bb] problem with LIBCHECK

2011-05-20 Thread Geoffrey Feld
Greetings fellow Crystallographers, I'm working on a structure at 1.8-A resolution that contains an acetone crosslink between 2 cysteines (crosslink was incorporated by adding 1,3-dichloroacetone). I figured that the easiest way to model this is to mutate one of the cysteines to S-acetonylcysteine

Re: [ccp4bb] CCP4BB Digest - 4 May 2009 to 5 May 2009 (#2009-124)

2009-05-06 Thread Geoffrey Feld
Refold protein 8M Urea: Sanjiv, The recommendations for rapid dilution and trying 6M GdmCl are great recommendations. As an alternative, I had a similar problem years ago with a membrane-associated receptor domain that was mostly found in inclusion bodies after expression (I assume this is your

Re: [ccp4bb] CCP4BB Digest - 8 Feb 2009 to 9 Feb 2009 (#2009-41)

2009-02-09 Thread Geoffrey Feld
This post has a question and an answer (good karma)...answer first In response to Matt's question about periplasmic harvesting, we do an osmotic lysis of e.coli by a series of centrifugations. First, harvest your cells normally (4k 15 min). Then vigorously resuspend in a 20% (w/v) sucrose, 1 mM ED