[ccp4bb] outdated certificate ccp

Dear CCP4 maintainers, I am getting an error of outdated certificate for https://legacy.ccp4.ac.uk Apparently, it became outdated yesterday. -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 P.S. Happy knowledge day, ever

[ccp4bb] Coot run in terminal not opening mtz

nates/maps still could be loaded from Coot menu. There are no errors/warnings when Coot is starting from the terminal. What can cause such behaviour and how to fix it? -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU L

[ccp4bb] Refmac5 occupancy group by residue name

mentioned inside “Occupancy refinement” paragraph. Is it possible to define occupancy groups in refmac5 using residue name? Kind regards, -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 mobile: +32 484 38 2

Re: [ccp4bb] How to cut fragment of map

’,sample_rate=3) m.update_ccp4_header() ligand = gemmi.read_structure(‘ligand.pdb’) m.set_extent(ligand.calculate_fractional_box(margin=3)) m.write_ccp4_map(‘masked.ccp4’) -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 mobile: +32 484 38 2

[ccp4bb] How to cut fragment of map

omeone had this problem in the past and could share their example? Kind regards, -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 mobile: +32 484 38 26 01 ##

Re: [ccp4bb] Regarding R factor value

1) print('{}\tRw {} Rfree {}'.format(pdb_filename,R_w,R_free)) # format as you wish -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 mobile: +32 484 38 26 01 > On 1 Jun 2022, at 08:17, Robbie Joosten wro

Re: [ccp4bb] 2019 mid-range & high-end LINUX laptops for structural biology

> be kindly avoided :) > > Thanks a lot, > > Domen > > > > > > -- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > -- Evg