Re: [ccp4bb] Incufridge for crystallization?

2008-12-11 Thread Daniel Pomeranz Krummel
Yes, slight overkill. But I would be concerned about vibrations. Also, would use cabinets in a coldroom to shield the trays/drops from turbulence created by fans. A colleague recently told me about excessive nucleation observed when a plate was left in the coldroom on a bench as opposed to being s

Re: [ccp4bb] protein crystallography universe

2008-10-14 Thread Daniel Pomeranz Krummel
Very nice! You did much leg work...Thanks. > Folks: > > While attending the ICSG meeting in Oxford last month it struck me that > there might be a need for a general protein crystallography portal > containing information about software, websites, jobs, journals, > organizations, education, etc.

Re: [ccp4bb] off-topic: Enzymology textbook recommendations?

2008-09-11 Thread Daniel Pomeranz Krummel
Hi Bill, I would recommend: Jencks. Catalysis in Chemistry and Enzymology. Good luck. Maybe in the future I can borrow lecture notes? Daniel > Hi Folks: > > I just found out that in a couple of weeks I am going to be teaching a > graduate student-level enzymology course. > > Can anyone recom

Re: [ccp4bb] agarose-acrylamide composite gels

2008-08-25 Thread Daniel Pomeranz Krummel
Hi Alex, Such gels were used to separate in the past 70S ribosome, plus/minus one protein - so separation is excellent. Cannot recall the references but papers published in the 70s' I believe. The agaose is used to provide "strength" to low percentage acrylamide, say 3% acrylamide/0.5% agarose. J

Re: [ccp4bb] microfluidics in protein crystallography

2008-07-22 Thread Daniel Pomeranz Krummel
Dear Isabel, It worked for a complex that I tested, but crystals were grown in similar conditions by vapour diffusion using Limbro plates. Advantage was that small amount of sample was needed. However, one can screen 96 conditions with as little as ~10 ul of sample using a drop dispensing robot.

Re: [ccp4bb] To improve xtal quality

2008-06-16 Thread Daniel Pomeranz Krummel
Shivesh If you have not already, maybe try the following: 1. Adding other alcohols as an additive. See work by Keichi Namba in improving his flagella crystals. The idea is to poison growth in one direction. I have also had success in "thickening" crystals grown in MPD, by addition of 1-3% isopro

Re: [ccp4bb] alternatives to IZIT

2008-06-15 Thread Daniel Pomeranz Krummel
Best of all, run it on a gel. > I am pretty sure it is just methylene blue. > > You can also see what kind of diffraction pattern the crystal has, or > just squish it and see if it crumbles. > > > On Jun 14, 2008, at 1:51 PM, Mark Del Campo wrote: > >> Before I place an order for some Izit, are th

Re: [ccp4bb] Off topic: insect cell expression

2008-06-13 Thread Daniel Pomeranz Krummel
I would try the following: 1. Remove the His tag. 2. If you need to get rid of the imidazole I would try adding ammonium sulfate. 3. Is your protein proline- and/or rich in aromatic residues? This may explain your need for imidazole and solubility. > Hi there, >   > Sorry for the off topic questi

Re: [ccp4bb] crystallisation and mosaicity

2008-06-03 Thread Daniel Pomeranz Krummel
Dear Sajid, I have observed a consistent reduction in mosaicity (from approx. 0.95 to 0.45) for one case by freezing the crystals in a cryostream (N2 vapour) as opposed to submerging in liquid nitrogen. Have others observed this? Daniel > > Dear All > > My protein size is ~30kD and crystallizes