Re: [ccp4bb] R-Rfree vs resolution

2010-08-02 Thread Alexandre Urzhumtsev
Dear Bei, Pavel's statistic can be completed by the analysis of the most frequent values (modes) versus resolution. When the resolution is plotted in the LOG-scale, these most frequent values are practically linear functions giving their easy interpolation / extrapolation as

Re: [ccp4bb] How to make fft-map more physically meaningful?

2010-07-08 Thread Alexandre Urzhumtsev
Dear Hailiang, This apparently is not the real physics, since the electron density has to be positive everywhere (hope I am right). Yes, you are right when you are talking about the electron density. You are wrong when you are talking about a Fourier synthesis calculated always at a finite r

[ccp4bb] polygon stand alone - updated version

2009-10-23 Thread Alexandre Urzhumtsev
Hello, An updated stand-alone version of the program POLYGON (Urzhumtseva et al., 2009, Acta Cryst, D65, 297-300) is available at http://www-ibmc.u-strasbg.fr/arn/Site_UPR9002/Polygon/Polygon.html A number of "bugs" were fixed; in particular this version was successfully tested at a Mac comp

Re: [ccp4bb] Could I improve an inconsecutive experimental map? - more about completeness

2009-02-23 Thread Alexandre Urzhumtsev
Hello, sorry to appear too much last days but since people continue to comment the problem of Alphar, my guess is that it might be a nice illustration to what was discussed this week-end. Since the crystal is very long in the c-direction (380 A) and relatively short in two others (50 A), I su