Re: [ccp4bb] Off-topic question related to ITC binding studies

2022-08-16 Thread ABHISHEK SUMAN
, we have already confirmed, through different approaches, that the protein doesn't behave as a dimer in the solution. Regards Abhishek *Dr. Abhishek Suman* *Ph.D (Structural Biology)* Indian Institute of Technology Hyderabad Kandi 502 284 Sangareddy Telangana INDIA Contact: +91 91002

[ccp4bb] Off-topic question related to ITC binding studies

2022-08-16 Thread ABHISHEK SUMAN
ou could help me to resolve this problem or at least let me know what explanation might be appropriate to answer the reviewer’s concern that it’s a general practice to report the KD in the Molar irrespective of stoichiometry. Thanks in advance. Regards Abhishek *Dr. Abhishek Suman* *Ph.D (St

[ccp4bb] Refining alternate conformation of duplex DNA

2019-06-18 Thread ABHISHEK SUMAN
the DNA duplex in Phenix. In am using Phenix GUI. Thanks Abhishek *_* *Abhishek Suman* *Research Scholar, PhD* C/o, Dr. Rajakumara Eerappa Macromolecular Structural Biology Group Department of Biotechnology R# 517,315, Academic Block - A Indian

[ccp4bb] Linking non-natural nucleotide with other natural nucleotides

2019-05-01 Thread Abhishek Suman
Dear experts, I am trying to insert a non-natural nucleotide (5CM, methylated cytosine) at 6th position in a 13-mer DNA. I have generated the CIF file for 5CM using ELBOW (Phenix). I tried replacing the Cytosine with 5CM and linking the O3' of -1 nucleotide with P of 5CM and o3' of 5CM with P o