Dear All
We call your attention to the CBMS Structural Biology Workbenches that will
take place in-person at Brookhaven National Laboratory, National Synchrotron
Light Source II. If you don't have an active guest appointment with the Lab the
deadline for registration is August 5.
To participa
To improve the clashscore you could try increasing the value of the
nonbonded_weight parameter, starting at 1000 (which I understand at one time
was the default in phenix.refine, but recently for me already gives a huge
decrease in clashscore). Since this will be avoiding clashes at the expense
I also noticed one residue looks like a Phe and there is another that may be a
Lys but not a very good view of it. When doing simulated annealing its not
outside the realm of possibility that it will introduce errors in other parts
of the model that could in theory explain the additional red d
Hi
We solved several structures of a protein (in different ligand bound
form) using cryoEM. While I was able to get reasonable fewer clash score and
rotamer outlier in my best data set, in other data set with poor map quality, I
am getting lots of clashes and rotamers outlier. I am fixin
