[ccp4bb] Postdoctoral position in Brisbane, Australia

Applications are invited for a post-doctoral position in the group of Bostjan Kobe at the School of Chemistry and Molecular Biosciences (SCMB), University of Queensland, Brisbane, Australia. We are searching for a motivated candidate to study the structure, function and drug targeting of TIR do

Re: [ccp4bb] Issue Aligning PanDDA Generated Map with PDB in PyMOL

Hello Sure, here is the header info from mapdump: - Logical Name: MAPIN Filename: Entry-A12A-event_1_1-BDC_0.24_map.native.ccp4 File name for input map file on unit 3 : Entry-A12A-event_1_1-BDC_0.24_map.native.ccp4 file size 32401024 ; logi

[ccp4bb] Instruct-ERIC Calls - Closing SOON!

Dear All, In addition to funded access to structural biology technologies and equipment, Instruct also launches calls for dedicated services and opportunities. Take a look at our current calls below! Early Career Research Call The Instruct ECR Call is closing 6 August. This is an opportunity fo

[ccp4bb] CryoEM current practices webinar - this week

Dear all, Please join the NIH supported CryoEM centers this Thursday for our July installment of the monthly CryoEM Current Practices webinar. When: Thursday, July 25, 2024 at 9 AM pacific / 12 PM eastern time Speaker: Virender Singh, Ph.D, UT Southwestern Medical Center Title: Revealing Struct

Re: [ccp4bb] Issue Aligning PanDDA Generated Map with PDB in PyMOL

It would be interesting (to me anyway) if you could run mapdump and post *just* the header info. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail Android Original Message On 22/07/2024 19:28, Aline Dias da Purificação

Re: [ccp4bb] Issue Aligning PanDDA Generated Map with PDB in PyMOL

On 23/07/2024 15:12, Aline Dias da Purificacao wrote -- Hello Thank you for your response. You’re right, I shouldn’t need to use |phenix.map_box|. I tried it as an attempt to make the map cover the selected region since the map’s origin does not cover the protein properly. The issue is tha

Re: [ccp4bb] Off topic: Nobel prize stats

I mean... https://www.xtal.iqf.csic.es/Cristalografia/parte_10_1-en.html _ Dr. Martin Martinez-Ripoll Research Professor Emeritus martin.m.rip...@csic.es xmar...@iqf.csic.es Department of Crystallography & Structural Biology www.xtal.iqf.csic.es www.xtal.iq

Re: [ccp4bb] Question about micro RNA structures

Hi Careina, For small molecules I run GRADE to create the .cif file from the SMILES string. I've done it for small (6 nucleotide) RNA sequences, so perhaps it will work for your miRNAs as well. Kind regards, Sara From: CCP4 bulletin board on behalf of careina

[ccp4bb] Question about micro RNA structures

Hello Everyone.I am working with miRNA for the first time. I would like to start of doing some docking studies to protein. Are there any suggestions on good tools to use to generate the miRNA structure from it's sequence?Kind regardsCareina  Yahoo Mail: Search, Organize, Conquer ##

Re: [ccp4bb] Issue Aligning PanDDA Generated Map with PDB in PyMOL

Hello, Do you really need to use phenix.map_box ? If your goal is to make e-density figure, in principle *.ccp4 map format contain all the informations needs by pymol. So you should be able to open it and represent it directly. I found a wiki for pymol which should help you here : https://p