https://www.dropbox.com/scl/fi/aqxm6s28mwbvufx5vkt4z/j7pointless.log?rlkey=075kia624ehmtzugnu5n8ymy0&dl=0
Here is a link to the pointless file , thank you for your help!
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Dear all,
We currently have Postdoc positions available in our group funded by the
Wellcome Trust. Our project focuses on understanding molecular mechanisms that
control the regulation of 3D genome organisation and how they contribute to
different aspects of genome function. The project is an i
Thank you!
At the end it appears that Zanuda is not really a "зануда", translated from
Russian as something being depressing, disagreeable or unsatisfactory.
Vaheh
From: CCP4 bulletin board on behalf of Randy John Read
Sent: Wednesday, February 21, 2024 11:55 A
That looks like an unnecessarily severe test buried in the i2 library, which
maybe should just be a warning. I can probably have a look at it
Phil
Sent from my iPad
> On 21 Feb 2024, at 16:52, Winter, Graeme (DLSLtd,RAL,LSCI)
> <6a19cead4548-dmarc-requ...@jiscmail.ac.uk> wrote:
>
>
> CA
Hi,
This is also one of my favourite methods, although I hadn’t realised that you
could just say “labin F=FC” instead of making fake intensities!
However, at a recent workshop I ran into a case where pointless misled me. This
was a case with tNCS where one of the translation components was half
Tried reporting to i2 dev list but it got bounced - feels like something others
may hit so don’t feel _too_ bad sending to the bb with a tiny attachment
[cid:CA3CE9EB-841D-41A3-A41E-F79714492B21]
Hi Folks
Helping someone out with some rather specialist data processing challenges and
she hit a
Various (all depressing) possibilities..
You don’t say what the sequence ID to the models us
Your protein is flexible with poor fit to the available models. How well do
those overlap?
The bioinformatics tools in i2 give you pictures showing this. Look at them
and see if there are sensible places t
Cant answer your question
"This might be a silly question, but I do not know the answer: After
refinement in P1 how do I distinguish which axis is crystallographic and
which one in non-crystallographic?"
Space group validation with Zanuda
[image: image.png]
CCP4
https://legacy.ccp4.ac.uk › newslet
Hi Vaheh,
for this purpose, I use
pointless hklin refmacXY.mtz < wrote:
...
>This might be a silly question, but I do not know the answer: After refinement
>in P1 how do I distinguish which axis is crystallographic and which one in
>non-crystallographic?
>
>Vaheh
##
Hi All,
Interesting discussion as I have a similar case. In my case molecular
replacement solution can be found easily in P21, P212121, with very similar
looking electron densities. However, R-factors remain relatively high (mid
30s). In P1 completeness suffers (75% completeness), maps look dec
Hi everyone,
I would like to draw your attention to the International PhD program of the
Integrative Molecular and Cellular Biology (IMCBio) graduate school at the
University of Strasbourg, France:
https://imcbio-phdprogram.unistra.fr
When you click on the link, scroll down to the section on I
You are cordially invited to join the Center for Biomolecular Structure
Lecture Series ………..
Olga Rechkoblit
Mount Sinai School of Medicine
WEDNESDAY, February 21, 13:30 (EST)
"Activation of bacterial immune system by cyclic nucleotides"
Register in advance for this meeting:
ht
Dear Colleagues,
I would like to draw your attention to the upcoming EMBO Course on
“Structural characterisation of macromolecular complexes”, which will
take place on the 1st-8th of June 2024 at the EPN Campus in Grenoble.
This course has been organised regularly since 2002 and provides
part
Hi,
It’s possible the true space group is P2(1) with the b-axis unique, and that
subset of true symmetry is found repeatedly with different incorrect
backgrounds of other copies. But I think the easiest way to resolve this
unambiguously is to solve in P1, and let that uncover the true symmetry.
But curiously, all the 4 best solutions correspond to a SG with a 21
screw along b.
And amazingly none of the TF solutions is rejected due to clashes.
On 21/02/2024 12:20, Eleanor Dodson wrote:
Lots of comments, but it would be easier to actually look at your
integrated data!
Some of the stat
Hi Eleanor,
> On 21 Feb 2024, at 12:20, Eleanor Dodson wrote:
>
> Lots of comments, but it would be easier to actually look at your integrated
> data!
> Some of the stats look a bit ropey -
> 621 reflections labelled as outliers by PHASER?
> Very anisotropic
> Moments go mad at the highest r
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The Institutde BiologieStructurale(IBS) in Grenoble, France,is currently
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(HCERES wave A, 2027-2031). We are looking for an individu
Lots of comments, but it would be easier to actually look at your
integrated data!
Some of the stats look a bit ropey -
621 reflections labelled as outliers by PHASER?
Very anisotropic
Moments go mad at the highest resolution..
The good news - extremely strong signal from the rotation function mea
Hi Marco,
To add to what Kay has said:
The intensity moments from Phaser (between 1.5 and 2 for the second moments
after correcting for anisotropy) are indicative of likely twinning. With the
cell dimensions, it might be possible to have pseudomerohedral twinning in an
orthorhombic space group
Hi Marco:
short comments (I sent you also a private mail):
- the stats in CORRECT.LP look ok, but I'd like to know what ISa is, and what
the number of outliers is ("misfits"). Seeing the delta-CC1/2 stats as a
function of frame number is also useful for judging e.g. the radiation damage -
this
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