The Nucleic Acid Knowledgebase (nakb.org https://nakb.org/) is a new web-based
data resource for experimentally-determined structures containing DNA and RNA
nucleic acid polymers and their biological assemblies.
NAKB currently indexes 16,000+ nucleic acid-containing structures derived from
all
Dear all,
NEW UPDATE:
At 00:00 UTC on July 12, 2023, wwPDB will remove the following files
from the PDB archive:
* ../pdb/ls-lR
* ../pdb/data/structures/ls-lR
* ../pdb/data/structures/models/ls-lR
* ../pdb/data/structures/models/current/ls-lR
* ../pdb/data/structures/models/obsolete/ls-lR
-
Hi, this seems like a perfect task for MMB (https://github.com/samuelflores/MMB) combined
with dinucleotide conformers (NtC) at https://dnatco.datmos.org
best,
JC
On 05. 06. 23 12:42, Abhilasha Thakur wrote:
Hi Everyone!!
I am currently working on nucleic acid structure prediction. If anyone
Hi David
This is *exactly* what I did when implementing iMosflm’s double-clickable icons
for Mac, Windows (“proper” Windows, not WSL, CygWin or MSYS) and Linux, many
years ago…
Since MacOS is based on (may well actually be, I can’t remember…) BSD UNIX,
loads of shell things (nearly but not qui
Dear Kay, Graeme and David,
Thank you very much for your reply and help! XDSwiki is always the first
reference that I will go to whenever having related questions. Since I am
really not a programming person, it was not that straightforward for me to
figure out how things work as it should be. A
I am not familiar with Macs, but on Linux the first problem could be easily
solved by having the desktop shortcut call a brief shell script rather than the
executable. The script would first set up the environment properly, then call
the executable.
Hi Everyone!!
I am currently working on nucleic acid structure prediction. If anyone is
also involved in research on nucleic acids, especially RNA, please let me
know. I have a PDB ID for an RNA molecule, but this structure contains
10-12 missing nucleotides and a sugar-phosphate break. Could you
