Re: [ccp4bb] mutate Methionine to Norleucine in Coot.

2022-10-25 Thread Jiang Xu
Hi Garib, Thank you for your reply. I edited the NLE.cif file in the CCP4 monomer library. You can see I successfully changed the group to L-peptide, as shown below: /Applications/ccp4-7.1/lib/data/monomers/list/mon_lib_list.cif | awk /NLE/ NLE NLE NORLEUCINE L-peptide22 9

[ccp4bb] Integrative Structural Biology Postdoc Positions

2022-10-25 Thread Zimmer, Jochen (jz3x)
Dear all, I would like to draw your attention to open postdoctoral researcher positions in my group. We use a diverse set of model systems to study how cell surfaces are engineered to support diverse physiological processes, including tissue homeostasis, cell wall formation, microbial encapsul

Re: [ccp4bb] mutate Methionine to Norleucine in Coot.

2022-10-25 Thread Garib Murshadov
It looks like that it is from ccp4 version 7 series. There, our programs may have changed HN2 with H2. However, you should check if the group name for this entry is L-peptide. If it is not L-peptide then coot will not recognise it as L-peptide (as far as I know) Regards Garib > On 26 Oct 2022,

Re: [ccp4bb] mutate Methionine to Norleucine in Coot.

2022-10-25 Thread Jiang Xu
Hi Garib, Thank you for your help. I looked for NLE in the coot monomer library and found a file named NLE.cif at '/Applications/ccp4-7.1/lib/data/monomers/n'. I then searched this file for 'HN2' but didn't find any line that contains this string. So is it a typo or I was looking at the wrong fi