[ccp4bb] NCCAT-NCITU 2023 CryoET short course - NYC, USA

2022-10-11 Thread Ed Eng
Dear all, NCCAT and NCITU are pleased to announce we will be offering our biennial cryoEM short course in tomography on April 10-14, 2023. This 1-week course is focused on the theory and practice of cryo-ET methods. We will step through each stage of the cryo-ET workflow (specimen preparation,

Re: [ccp4bb] Error while running EDSTATS

2022-10-11 Thread Ian Tickle
Hi Kristoffer The deposited structure factor file is missing an FOM column which is needed for MTZFIX to do its job of checking the veracity of the FWT and DELFWT columns. The message I get with CCP4 7.1 is different, in fact it's exactly what I expect: mtzfix: ERROR: Labels not found - maybe

Re: [ccp4bb] Error while running EDSTATS

2022-10-11 Thread Ian Tickle
Hi Kristoffer Thanks for the error report. I'll look into it and get back to you. Cheers -- Ian On Tue, 11 Oct 2022 at 17:09, Kristoffer Lundgren < 8a31f470d88b-dmarc-requ...@jiscmail.ac.uk> wrote: > Dear all, > > > > I am trying to run EDSTATS on a neutron structure containing a manganes

[ccp4bb] Error while running EDSTATS

2022-10-11 Thread Kristoffer Lundgren
Dear all, I am trying to run EDSTATS on a neutron structure containing a manganese ion (https://www.rcsb.org/structure/7KKW), but either I am doing something wrong or something is broken. When using EDSTATS supplied with CCP4 8.0 I end up with the error message: mtzfix: WARNING: Output file i

Re: [ccp4bb] Error while running BLEND

2022-10-11 Thread Pedro Matias
Hi Graeme, I suspected as much. I think I still have a CCP4 7.x installed. Thanks & best regards, Pedro On 11/10/2022 15:33, Winter, Graeme (DLSLtd,RAL,LSCI) wrote: Hi Pedro Problem here is that ccp4.python is Python 3 and BLEND is still written for Python 2.7 This was one of the modernisa

Re: [ccp4bb] Error while running BLEND

2022-10-11 Thread Winter, Graeme (DLSLtd,RAL,LSCI)
Hi Pedro Problem here is that ccp4.python is Python 3 and BLEND is still written for Python 2.7 This was one of the modernisation things which changed from 2 -> 3 An older version of ccp4 would probably still work - version 7.something Looks like BLEND needs to be updated… Best wishes Graeme

[ccp4bb] Error while running BLEND

2022-10-11 Thread Pedro Matias
Dear All, I am trying to run BLEND on a series of XDS files in MTZ format. However, I get the following error: Traceback (most recent call last):   File "/pxsoft/ccp4/ccp4-8.0/share/blend/python/create_file_for_BLEND.py", line 74, in     newname=string.join(["dataset_",sfx],"") AttributeE