Re: [ccp4bb] Off Topic: CCP4MG Help

2021-11-05 Thread CCP4BB
Hi Or make your first object residues 1-50 & 60-100 and the second object 50-60 (i.e. don't leave a gap between them). ISTR there's a way to join two atoms, but I can't remember off-hand. Harry -- Dr Harry Powell > On 5 Nov 2021, at 19:10, Denis Rousseau > wrote: > > Hi Matthew > > Try mak

Re: [ccp4bb] Off Topic: CCP4MG Help

2021-11-05 Thread Denis Rousseau
Hi Matthew Try making one set from 1-100 and a separate set from 50-60. Then change the color of the 50-60. It worked on my computer. Best Denis From: CCP4 bulletin board on behalf of Whitley, Matthew J Sent: Friday, November 5, 2021 2:21 PM To: CCP4BB@JISC

[ccp4bb] Postdoc positions @ NIH

2021-11-05 Thread Elmlund, Hans (NIH/NCI) [E]
Hi Everyone, The Biological Computing Section (BCS) Center for Structural Biology (CSB), National Cancer Institute (NCI)—Frederick campus are seeking to recruit four postdoctoral fellows. Link to ad below: https://ccr.cancer.gov/careers/post-doctoral-fellow-electron-microscopy-image-processing-

[ccp4bb] Off Topic: CCP4MG Help

2021-11-05 Thread Whitley, Matthew J
Hello all, Looking for advice from any CCP4MG users. I am making some structural figures and have run into a problem. I posted a question to the CCP4MG-specific email list quite a while ago but received no responses, so I don't know if that list is still active. Essentially, I want to change

Re: [ccp4bb] AW: [ccp4bb] MrBUMP for cryo-EM

2021-11-05 Thread Adam Simpkin
Hi Herman, That's correct! - Adam To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/C

[ccp4bb] AW: [ccp4bb] MrBUMP for cryo-EM

2021-11-05 Thread Schreuder, Herman /DE
Hi Adam, Thank you for your response. Using the pdblocal keyword, I was able to run MrBUMP. Also the cryo keyword was recognized, but then the mode of operation was set to "MODELS" and only search models were generated. From your email, I understand that I will have to wait for ccp4 update 017

Re: [ccp4bb] MrBUMP for cryo-EM

2021-11-05 Thread Adam Simpkin
Hi Herman, A path to a local copy of the PDB will work, although I should caution that MrBUMP's cryo-EM mode is releasing with ccp4 update 017 next week. This also corresponds with an update Ronan has made that allows MrBUMP to search the EBI Alphafold database, so that will also be available