Re: [ccp4bb] AW: [ccp4bb] Antwort: Re: [ccp4bb] chain on 2-fold axis?

2021-09-01 Thread James Holton
Clearly, the code can change without anyone knowing! For this reason, and others, I try to remember to do it manually and to check.  In cases of pseudo-symmetry, for example P21 with a 90.2 deg beta angle and high tNCS, the software may or may not decide it should pick free flags in the P222 s

[ccp4bb] chain on 2-fold axis?

2021-09-01 Thread Wim Burmeister
Hello, I just would guess that you have twinning and disorder of the 5th subunit around the 2-fold axis at the same time. The twinning in P3221 with operators HKL and KH-L (involving the full unit cell contents) is required to explain the observed twinning fraction whereas only the disorder ca

[ccp4bb] freerflag (was: Re: [ccp4bb] chain on 2-fold axis?)

2021-09-01 Thread Ville Uski
On Mon, Aug 30, 2021 at 08:44:03PM +0100, Kay Diederichs wrote: > The following sentences (which are somewhat difficult to understand > for me) in https://www.ccp4.ac.uk/html/freerflag.html appear to > document that: "The FreeR_flag is randomly and uniformly distributed > reflexion-by-reflexion, bu

[ccp4bb] PhD position at University of Oslo

2021-09-01 Thread Nikolina Sekulic
Dear colleagues, I wish to draw your attention to PhD position open in my laboratory. A 3-year PhD research fellowship is available in the Group of Structural Biology and Chromatin. The Group of Structural Biology and Chromatin (Sekulic group) investigates chromatin biology and epigenetics wit

Re: [ccp4bb] Antwort: [ccp4bb] AW: [ccp4bb] AW: [ccp4bb] Antwort: Re: [ccp4bb] chain on 2-fold axis?

2021-09-01 Thread Peer Mittl
Dear Herman, What you write "Or is the disordered chain enclosed in the 4 non-disordered chains, with only crystal contacts between the non-disordered chains? " seems to be the case. The 4 chains form a 3221 lattice with a "pocket" on the 2-fold. One domain of the protein fits nicely into thi

[ccp4bb] AW: Antwort: [ccp4bb] AW: [ccp4bb] AW: [ccp4bb] Antwort: Re: [ccp4bb] chain on 2-fold axis?

2021-09-01 Thread Schreuder, Herman /DE
Dear Peer, I must admit that from the beginning I was not happy to have 5 chains “twinned”, while in fact only one chain is “twinned”, e.g. on a special position. However, a twin fraction different from 0.5 suggested the existence of twin domains and not a random distribution of A and B conform