Dear All,
I have a ligand-protein complex and I wish to calculate different kinds of omit
maps (say, composite omit maps, simulated annealing maps, other unbiased fo-fc
maps ). I wish to omit the ligand and 3.5 angstrom 3D space around it. I have
tried phenix for this purpose but get this error
Hi Fred
Ligplot diagram is part of PDBsum output - maybe that will work for you.
Bostjan
--
Bostjan Kobe FAA
Australian Research Council Laureate Fellow
Professor of Structural Biology
School of Chemistry and Molecular Biosciences
and Institute for Molecular Bioscience (Division of Chemistry an
What about coot? Have a look at
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/coot-may-2017-ligands-madrid-mcs2017-csic.pdf
pp28-40
and
Emsley P. (2017). Tools for ligand validation in Coot.
Acta Crystallogr. D73, 203–210.
https://doi.org/10.1107/S2059798317003382
https://www.ncbi.n
Hi Fred,
I'm currently making some similar figures and I came across PLIP
https://plip-tool.biotec.tu-dresden.de/plip-web/plip/index
It doesn't give the 1d plots but it gives a very nice pymol output to
make 3d images.
Hope that helps,
Rob
ce
On 6/04/2021 15:47, Fred Vellieux wrote:
Hi f
Hi folks,
I'm trying to run Ligplot on a PDB file that contains a residue with
type UNL (Unknown Ligand). I hadn't been using LigPlot for perhaps 2
years now (which means that I had to reinstall, with an expired license,
and get familiar with it again). I get the following error message
(rath
Jeremy Cockcrofts web stuff is quite good:
http://pd.chem.ucl.ac.uk/pdnn/symm2/pntgrp1.htm
You can click through to the stereograms.
Best wishes
Jon.C.
Sent from ProtonMail mobile
Original Message
On 6 Apr 2021, 12:34, careinaedgo...@yahoo.com wrote:
> Can anyone send me a
Can anyone send me a table that shows rotational symmetry in all viewing
directions for the different crystal systems? I don't have my text book with me
and I cannot find that tableThank you Careina.
To unsubscribe from th
Dear all,
We have an open postdoc position available in our lab at the Leicester
Institute for Structural and Chemical Biology, UK. Our group focuses on signal
processing on enhancers and how 3D genome organisation contributes to various
aspects of genome function. For examples of recent work s
Dear all,
The Partnership for Structural Biology (PSB), an alliance of research
institutes (EMBL, ESRF, IBS and ILL) located in Grenoble, France, is
pleased to announce that the PSB Symposium "Frontiers in Bioimaging"
will take place on 1-2 July 2021. Registration and programme will be
releas
